Once Palpatine was sentenced to arrest, he knew the Jedi would come back and kill him. Unfortunately, Palpatine was confronted by four Jedi: Mace Windu, Agen Kolar, Saesee Tiin, and Kit Fisto. Once he killed all the Jedi, Palpatine told Anakin: "Once again the Sith will rule the galaxy once again".
Palpatine's plot worked on all the Jedi, his new apprentice, Darth Vader, (originally Anakin Skywalker) sought out the remaining Jedi out of the temple with the 501st. One Order 66 was when Obi-Wan Kenobi just killed General Grievous, Order 66 was spread to Clone Commander Cody, who told the other clones to kill Obi-Wan on a cliff. Obi Wan fell of with a creature "Boga". He was one of the Jedi to survive Order 66.
Yoda confronted Palpatine in his new office on Coruscant and Obi Wan faced Darth Vader. Yoda had lost to Palpatine, but he snuck out of a ventalator and found himself with Bail Organa. Obi Wan almost killed his former padawan in a fight that could change Darth Vader. In the end Obi Wan took Darth Vader's lightsaber and left him for dead.
- Stass Allie: Stationed on Saleucami; killed by Commander Neyo and CT-3423.
- Ki-Adi Mundi: Stationed on Mygeeto; killed by Commander Bacara and the Galactic Marines.
- Plo Koon: Stationed on Cato Neimoidia; killed by Captain Jag.
- Luminara Unduli: Stationed on Kashyyyk; killed by Commander Faie.
- Aayla Secura: Stationed on Felucia; killed by Commander Bly and members of the 327th Star Corps.
- Hundreds of other Jedi, were killed in Jedi Temple by Darth Vader and the 501st legion.
- Obi-Wan Kenobi, survived on Utapau, was killed by Darth Vader on Death Star.
- Yoda, survived on Kashyyyk, died on Dagobah.
- Shaak Ti, survived in Jedi Temple, was killed by Galen Marek on Felucia.
- Other Jedi, doesn't appeared in LEGO.